Tools

Code and pipelines developed in the PrangeLab are openly available on GitHub → prangelab.
Our tools support reproducible, large-scale transcriptomic and epigenomic analyses.

Featured Repositories

• scOmnom — toolkit for scalable single-cell omics analysis
• omnomnomics — modular workflows for transcriptomic and epigenomic data processing
• scRNA-seq_helper_functions — utility functions for single-cell RNA-seq analysis
• coloRspacer — lightweight color palette generator for reproducible plotting

Focus Areas

• Single-cell and spatial transcriptomics
• Epigenomics (ChIP-seq, ATAC-seq, CUT&Tag)
• Functional genomics (CRISPR screens, perturb-seq)